Imaging & Mathematics in Anatomy
2024
Keshmiri H, Cikes D, Samalova M, Schindler L, Appel L-M, Urbanek M, Yudushkin I, Slade D, Weninger WJ, Peaucelle A, Penninger J, Elsayad K
Brillouin light scattering anisotropy microscopy for imaging the viscoelastic anisotropy in living cells
Nature Photonics (2024) 18: 276-285
2022 & 2023
Imaging the microscopic viscoelastic anisotropy in living cells
Keshmiri H, Cikes D, Samalova M, Schindler L, Appel L. Urbanek M. Yudushkin I, Slade D, Weninger WJ, Peaucelle A, Penninger J, Elsayad K
Cold Spring Harbour Laboratory BioRxiv (2023) Preprint
Lossy image compression in a preclinical multimodal imaging study
Cunha FF, Blüml V, Zopf LM, Walter A, Wagner M, Weninger WJ, Thomaz LA, Tavora LMN, da Silva Cruz LA, Faria SMM
J Digit Imaging (2023), 36:1826-1850
Spinal chord from body donor is suitable for mulitcolor immunofluorescence
Reissig LF, Carrero-Rojas G, Maierhofer U, MOghaddam AS, Hainfellner A, Gesslbauer B, Haier T, Streicher J, Aszmann OC, Pastor AM, Weninger WJ, Blumer R
Histochem Cell Biol (2023), 159: 23-45
Visualizing 3D embryo and tissue morphology - A decade of using high-resolution episcopic microscopy (HREM) in biomedical imaging
Geyer SH, Weninger WJ
Biomedicines (2022) 10: 1123
2020 & 21
Artefacts in volume data generated with high resolution episcopic microscopy (HREM)
Reissig LF, Geyer SH, Rosse J, Prin F, Wilson R, Szumska D, Galli A, Tudor C, White JK, Mohun TJ, Weninger WJ
Biomedicines (2021) 9: 1711
High-Resolution episcopic microscopy (HREM) in multimodal imaging approaches
Keuenhof KS Kavirayani A, Reier S, Geyer SH, Weninger WJ, Walter A
Biomedicines (2021) 9: 1918
High-resolution episcopic microscopy
Weninger WJ, Geyer SH
in Imaging Modalities for Biological and Preclinical Research: A Compendium, vol1 (ed. Walter A, Mannheim J, Caruana CJ) pp1.2.g - 1.2.g-9; IOP Publishing (2021)
Cross-modality imaging of murine tumor vasculatur - a feasibility study
Zopf LM, Heimel P, Geyer SH, Kavirayani A. Reier S, Fröhlich V, Stiglbaiuer-Tscholakolff A, Chen U, Nics L, Zinnanti J, Drexler W, MItterhauser M, Helbich T, Weninger WJ, Slezak P, Obenauf A, Bühler K, Walter A
Mol Imaging Bio (2021) 23: 894
Multimodality imaging beyond CLEM: Showcases of combined in-vivo preclinical imagig and ex-vivomicroscopy to detect murine mural vascular lesions
Keuenhof K, Heimel P, Zopf LM, Raigel M, Turyanskaya A, Kavirayani A, Reier S, Glösmann M, Schöfer C, Kralovics R, Streli C, Weninger WJ, Geyer SH, Slezak P, Macfelda K, Jäger R, Wanek T, Walter A
Meth in Cell Biol (2021) 162:389-415
Bayesian inversion for electrical-impedance tomography in medical imaging using the nonlinear Poisson-Boltzmann equation
Taghizadeh L, Karimi A, Stadlbauer B, Weninger WJ, Kaniusas E, Heitzinger C
Computer Methods in Applied Mechanics and Engineering (2020), 365
High Resolution Episcopic Microscopy (HREM): Looking back on 13 years of successful generation of digital volume data of organic material for 3D visualisation and 3D display in Holography
Geyer SH, Weninger WJ
3D Imaging and 3D Display,MDPI (2020); (ed. TC Poon, Y Zhang, L Cao & H Yoshikawa) pp329-342
Correlated multimodal imaging in life sciences: expanding the biomecical horizon
Walter A, Paul-Gilloteaux PP, Plochberger B, Sefc L, Verkade P, Mannheim JG, Slezak P, Unterhuber A, Marchetti-Deschmann M, Ogris M, Bühler K, Fixler D, Geyer SH, Weninger WJ, Glössmann M, Handschuh S, Wanek T
Front Phys (2020), 8
2018 & 19
Visulaising the cardiovascular system of emrbyos of biomedical model organisms with high resolution episcopic microscopy (HREM)
Weninger WJ, Maurer-Gessek, Reissig LF, Prin F, Wilson R, Galli A, Adams DJ, White JK, Mohun TJ, Geyer SH
J Cardiovasc Dev Dis (2018) 15;5 pii E58
2016 & 17
Visualisation of skin perfusion by indocyanine green flourescence angiography - a feasibility study
Steinbacher J, Yoshimatsu H, Meng S, Hamscha UM, Chan CS, Weninger WJ, Wu CT, Cheng MH, Tzou CH
Plast Reconstr Surger Global Open (2017), 5: e1455
Feasibility of bone perfusion evaluation in cadavers using indocyanine green fluorescence angiography
Yoshimatsu H, Steinbacher J, Meng S, Hamscha UM, Weninger WJ, Tinhofer IE, Yamamoto T, Iida T, Tzou CJ
Plast Reconstr Surg Glob Open (2017), 5: e1570
A reliable technique for US-guided perineural injection in ulnar neuropathy at the ellbow
Hamscha UM, Tinhofer I, Heber S, Grisold W, Weninger WJ, Meng S
Muscle Nerve (2017), 56:237-241
High-Resolution Episcopic Microscopy (HREM) - simple and robust protocols for processing and visualising organic materials
Geyer SH, Maurer-Gesek B, Reissig L, Weninger WJ
J Vis Exp [2017(125)]
2014 & 15
High-resolution episcopic microscopy (HREM): a useful technique for research in wound care
Geyer SH, Tinhofer IE, Lumenta DB, Kamolz LP, Ludwik B, Finnerty CC, Herndon DN, Weninger WJ
Ann Anat (2015) 197: 3-10
Imaging the zebrafish dentation: From traditional approaches to emerging technologies
Bruneel B, Mathä M, Paesen R, Ameloot M, Weninger WJ, Huysseune A
Zebrafish (2015), 12: 1-10
High-resolution episcopic microscopy - HREM
Weninger WJ, Geyer SH, Mohun TJ
Imaging and Microscopy (2014) 16 (4): 22-24
High-resolution episcopic microscopy (HREM) - a tool for visualising skin biopsies
Geyer SH, Nöhammer MM, Mathä M, Reissig L, Tinhofer IE, Weninger WJ
Microscopy and Microanalysis (2014) 20: 1356-1367
Dual modality optical coherence an whole-body photoacoustic tomography imaging of chick embryos in multiple developmental stages
Liu M, Maurer B, Hermann B, Zabihian B, Sandrian MG, Unterhuber A, Baumann B, Zhang EZ, Beard PC, Weninger WJ, Drexler W
Biomedical Optics Express (2014) 5:3150-3159
Phenotyping strucutral abnormalities in mouse embryos using high-resolution episcopic microscopy
Weninger WJ, Geyer SH, Martineau A, Galli A, Adams DJ, Wilson R, Mohun TJ
Disease Models & Mechanisms (2014) 7: 1143-1152
2012 & 13
A coming of age: advanced imaging technologies for characterising the developing mouse
Norris FC, Wong MD, Greene ND, Scambler PJ, Weaver T, Weninger WJ, Mohun TJ, Henkelman RM, Lythoge MF
Trends Genet (2013) 29:700-711
3D visualisation of skin replacement material
Weninger WJ, Kamolz LP, Geyer SH
in "Dermal Replacements in Gerneral, Burn, Plastic Surgery" (ed. Kamolz L and Lumenta D), Springer-Verlag (2013)
Metric characterization of the aortic arch of early mouse fetuses and of a fetus featuring a double lumen aortic arch malformationGeyer SH, Weninger WJ
Ann Anat (2013) 195:175-182
Episcopic 3D Imaging Methods: Tools for Researching Gene Function.
Weninger WJ, Geyer SH
in "Changing Views On Living Organisms" (ed. Neri C), pp. 169-188. Bentham Sciences (2013)
Episcopic three-dimensional imaging of embryos
Mohun TJ, Weninger WJ
Cold Spring Harb Protoc (2012) 641-646
Embedding embryos for Episcopic Fluorescence Image Capturing (EFIC)
Mohun TJ, Weninger WJ
Cold Spring Harb Protoc (2012) 675-677
Embedding Embryos for High-Resolution Episcopic Microscopy (HREM)
Mohun TJ, Weninger WJ
Cold Spring Harb Protoc (2012) 678-680
Generation of volume data by episcopic three-dimensional imaging of embryos
Mohun TJ, Weninger WJ
Cold Spring Harb Protc (2012) 681-682
High resolution episcopic microscopy - current applications
Geyer SH, Mohun TJ, Kamolz LP, Weninger WJ
Current Biotechnology (2012) 1: 281-286
2010 & 11
Imaging heart development using high-resolution episcopic microscopy
Mohun TJ, Weninger WJ
Curr Opin Genet Dev (2011) 21: 573-578
Imaging cardiac developmental malformations in mouse embryos
Mohun TJ, Weninger WJ, Battacharya S
in Imaging Heart Development and Regeneration (ed Rosenthal N Harvey RP), Elsevier (2020) pp 779-791
Episcopic 3D imaging of embryos
Mohun TJ, Weninger WJ
in Imaging in Developmental Biology: A Laboratory Manual (ed Wong R & Sharpe J) Cold Spring Harbor Laboratory Press (2010)
2008 & 09
Visualiszing vertebrate embryos with episcopic 3D imaging techniques
Geyer SH, Mohun TJ, Weninger WJ
TSW Development & Embryology (2009) 9: 1423-1437
Three-dimensional (3D) visualisation of the cardiovascular system of mouse embryos and fetuses
Weninger WJ, Geyer SH
The Open Cardiovascular Imaging Journal (2009) 1: 1-12
Three-dimensional description and mathematical characterization of the parasellar internal carotid artery in human infants
Meng S, Costa LdaF, Geyer SH, Viana MP, Reiter C, Müller GB, Weninger WJ
J Anat (2008) 212: 636-44
Objective characterisation of the course of the parasellar internal carotid artery using mathemaical tools
Meng S, Geyer SH, Costa LD, Viana MP, Weninger WJ
Surg Radiol Anat (2008) 9: 282-289
3D visualisation of embryo anatomy
Geyer SH, Maurer B, Weninger WJ
in Research Advances in Anatomy (ed Mohan RM), GRN (2008) pp 1-17
Episcopic 3D imaging methods: tools for researching gene function
Weninger WJ, Geyer SH
Curr Genomics (2008) 9: 282-289
2006 & 07
µMRI-HREM pipeline for high-throughput, high resolution phenotyping of murine embryos
Pieles G, Geyer HS, Szumska D, Schneider J, Neubauer S, Clarke K, Dorfmeister K, Franklyn A, Brown SD, Battacharya S, Weninger WJ
J Anat (2007) 211: 132-137
Three dimensional analysis of molecular signals with episcopic imaging techniques
Weninger WJ, Mohun T
Methods Mol Biol (2007) 411: 35-46
High-resolution episcopic microscopy: a rapid technique for high detailed 3D analysis of gene activity in the context of tissue architecture and morphology
Weninger WJ, Geyer SH, Mohun TJ, Rasskin-Gutman D, Matsui T, Ribeiro I, daFCosta L, Izpisúa-Belmonte JC, Müller GB
Anat Embryol (2006) 211: 213-221
2002 & 03
Phenotyping transgenic embryos: A rapid 3D-screening method based on Episcopic Flourescence Imaging Capturing (EFIC)
Weninger WJ & Mohun TJ
Nature Genet (2002) 30: 59-65
2000 & 01
Episcopic Fluorescence Image Capturing
Weninger WJ & Mohun T
in “Gene Expression Monitoring and 3D Visualization”, edited by J Streicher, Springer NYC
1998 & 99
A rapid method of 3D-reconstruction from serial sections: applications in anatomy and embryology
Weninger WJ, Meng S, Streicher J, Müller GB
Anat Embryol (1998) 197: 341-348
1996 & 97
External Marker Based Automatic Congruencing: A New Method of 3D-Reconstruction from serial sections
Streicher J Weninger WJ, Müller GB
Anat Rec (1997) 248: 583-602
Weninger WJ; Streicher J, Müller GB
Dreidimensionale Rekonstruktion histologischer Schnittserien am Computer
Wien Klin Wochenschrift (1996) 108: 515-520